Nested sampling for parameter inference in systems biology: application to an exemplar circadian model

Por Aitken, Stuart, Akman, Ozgur E
Publicado em 2013

Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a GPU-CPU combination

Por Avramidis, Eleftherios, Akman, Ozgur E.
Publicado no BMC Syst Biol (2017)

Slow–fast control of eye movements: an instance of Zeeman’s model for an action

Por Clement, Richard A., Akman, Ozgur E.
Publicado no Biol Cybern (2020)

Dizzy-Beats: a Bayesian evidence analysis tool for systems biology

Por Aitken, Stuart, Kilpatrick, Alastair M., Akman, Ozgur E.
Publicado no Bioinformatics (2015)

A simplified modelling framework facilitates more complex representations of plant circadian clocks

Por Foo, Mathias, Bates, Declan G., Akman, Ozgur E.
Publicado no PLoS Comput Biol (2020)

Stochastic models of cellular circadian rhythms in plants help to understand the impact of noise on robustness and clock structure

Por Guerriero, Maria L., Akman, Ozgur E., van Ooijen, Gerben
Publicado em 2014

Nonlinear Dynamics in Gene Regulation Promote Robustness and Evolvability of Gene Expression Levels

Por Steinacher, Arno, Bates, Declan G., Akman, Ozgur E., Soyer, Orkun S.
Publicado no PLoS One (2016)

Ultrasensitive Negative Feedback Control: A Natural Approach for the Design of Synthetic Controllers

Por Montefusco, Francesco, Akman, Ozgur E., Soyer, Orkun S., Bates, Declan G.
Publicado no PLoS One (2016)

Peeking into Pit Fields: A Multiple Twinning Model of Secondary Plasmodesmata Formation in Tobacco

Por Faulkner, Christine, Akman, Ozgur E., Bell, Karen, Jeffree, Chris, Oparka, Karl
Publicado em 2008

Robustness from flexibility in the fungal circadian clock

Por Akman, Ozgur E, Rand, David A, Brown, Paul E, Millar, Andrew J
Publicado em 2010

Corrigendum for the paper ‘Digital clocks: simple Boolean models can quantitatively describe circadian systems’

Por Akman, Ozgur E., Watterson, Steven, Parton, Andrew, Binns, Nigel, Millar, Andrew J., Ghazal, Peter
Publicado em 2012

Digital clocks: simple Boolean models can quantitatively describe circadian systems

Por Akman, Ozgur E., Watterson, Steven, Parton, Andrew, Binns, Nigel, Millar, Andrew J., Ghazal, Peter
Publicado em 2012

Isoform switching facilitates period control in the Neurospora crassa circadian clock

Por Akman, Ozgur E, Locke, James CW, Tang, Sanyi, Carré, Isabelle, Millar, Andrew J, Rand, David A
Publicado em 2008

Isoform switching facilitates period control in the Neurospora crassa circadian clock

Por Akman, Ozgur E, Locke, James C W, Tang, Sanyi, Carré, Isabelle, Millar, Andrew J, Rand, David A
Publicado em 2008

Light and circadian regulation of clock components aids flexible responses to environmental signals

Por Dixon, Laura E, Hodge, Sarah K, van Ooijen, Gerben, Troein, Carl, Akman, Ozgur E, Millar, Andrew J
Publicado no New Phytol (2014)

Mapping epigenetic changes to the host cell genome induced by Burkholderia pseudomallei reveals pathogen-specific and pathogen-generic signatures of infection

Por Cizmeci, Deniz, Dempster, Emma L., Champion, Olivia L., Wagley, Sariqa, Akman, Ozgur E., Prior, Joann L., Soyer, Orkun S., Mill, Jonathan, Titball, Richard W.
Publicado no Sci Rep (2016)

Quantification and Selection of Ictogenic Zones in Epilepsy Surgery

Por Laiou, Petroula, Avramidis, Eleftherios, Lopes, Marinho A., Abela, Eugenio, Müller, Michael, Akman, Ozgur E., Richardson, Mark P., Rummel, Christian, Schindler, Kaspar, Goodfellow, Marc
Publicado no Front Neurol (2019)

Quantitative analysis of regulatory flexibility under changing environmental conditions

Por Edwards, Kieron D, Akman, Ozgur E, Knox, Kirsten, Lumsden, Peter J, Thomson, Adrian W, Brown, Paul E, Pokhilko, Alexandra, Kozma-Bognar, Laszlo, Nagy, Ferenc, Rand, David A, Millar, Andrew J
Publicado em 2010

SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology

Por Adams, Richard, Clark, Allan, Yamaguchi, Azusa, Hanlon, Neil, Tsorman, Nikos, Ali, Shakir, Lebedeva, Galina, Goltsov, Alexey, Sorokin, Anatoly, Akman, Ozgur E., Troein, Carl, Millar, Andrew J., Goryanin, Igor, Gilmore, Stephen
Publicado em 2013