Is Transcriptional Regulation of Metabolic Pathways an Optimal Strategy for Fitness?

Por Troein, Carl, Ahrén, Dag, Krogh, Morten, Peterson, Carsten
Publicado em 2007

Captured metagenomics: large-scale targeting of genes based on ‘sequence capture’ reveals functional diversity in soils

Por Manoharan, Lokeshwaran, Kushwaha, Sandeep K., Hedlund, Katarina, Ahrén, Dag
Publicado no DNA Res (2015)

Measuring genome conservation across taxa: divided strains and united kingdoms

Por Kunin, Victor, Ahren, Dag, Goldovsky, Leon, Janssen, Paul, Ouzounis, Christos A.
Publicado em 2005

MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics

Por Kushwaha, Sandeep K, Manoharan, Lokeshwaran, Meerupati, Tejashwari, Hedlund, Katarina, Ahrén, Dag
Publicado no BMC Bioinformatics (2015)

Erratum to: MetCap: A bioinformatics probe design pipeline for large-scale targeted metagenomics

Por Kushwaha, Sandeep K., Manoharan, Lokeshwaran, Meerupati, Tejashwari, Hedlund, Katarina, Ahren, Dag
Publicado no BMC Bioinformatics (2016)

The carbon starvation response of the ectomycorrhizal fungus Paxillus involutus

Por Ellström, Magnus, Shah, Firoz, Johansson, Tomas, Ahrén, Dag, Persson, Per, Tunlid, Anders
Publicado no FEMS Microbiol Ecol (2015)

Cell periphery-related proteins as major genomic targets behind the adaptive evolution of an industrial Saccharomyces cerevisiae strain to combined heat and hydrolysate stress

Por Wallace-Salinas, Valeria, Brink, Daniel P., Ahrén, Dag, Gorwa-Grauslund, Marie F.
Publicado no BMC Genomics (2015)

Proteome of the Nematode-Trapping Cells of the Fungus Monacrosporium haptotylum

Por Andersson, Karl-Magnus, Meerupati, Tejashwari, Levander, Fredrik, Friman, Eva, Ahrén, Dag, Tunlid, Anders
Publicado em 2013

Genomic Mechanisms Accounting for the Adaptation to Parasitism in Nematode-Trapping Fungi

Por Meerupati, Tejashwari, Andersson, Karl-Magnus, Friman, Eva, Kumar, Dharmendra, Tunlid, Anders, Ahrén, Dag
Publicado em 2013

Interspecific and host-related gene expression patterns in nematode-trapping fungi

Por Andersson, Karl-Magnus, Kumar, Dharmendra, Bentzer, Johan, Friman, Eva, Ahrén, Dag, Tunlid, Anders
Publicado no BMC Genomics (2014)

DNA Content in Extracellular Vesicles Isolated from Porcine Coronary Venous Blood Directly after Myocardial Ischemic Preconditioning

Por Svennerholm, Kristina, Rodsand, Pouria, Hellman, Urban, Waldenström, Anders, Lundholm, Marie, Ahrén, Dag, Biber, Björn, Ronquist, Gunnar, Haney, Michael
Publicado no PLoS One (2016)

Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea

Por Hüttner, Silvia, Nguyen, Thanh Thuy, Granchi, Zoraide, Chin-A-Woeng, Thomas, Ahrén, Dag, Larsbrink, Johan, Thanh, Vu Nguyen, Olsson, Lisbeth
Publicado no Biotechnol Biofuels (2017)

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

Por Karp, Peter D., Ouzounis, Christos A., Moore-Kochlacs, Caroline, Goldovsky, Leon, Kaipa, Pallavi, Ahrén, Dag, Tsoka, Sophia, Darzentas, Nikos, Kunin, Victor, López-Bigas, Núria
Publicado em 2005

Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors

Por Shah, Firoz, Nicolás, César, Bentzer, Johan, Ellström, Magnus, Smits, Mark, Rineau, Francois, Canbäck, Björn, Floudas, Dimitrios, Carleer, Robert, Lackner, Gerald, Braesel, Jana, Hoffmeister, Dirk, Henrissat, Bernard, Ahrén, Dag, Johansson, Tomas, Hibbett, David S., Martin, Francis, Persson, Per, Tunlid, Anders
Publicado no New Phytol (2016)

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

Por Stajich, Jason E., Wilke, Sarah K., Ahrén, Dag, Au, Chun Hang, Birren, Bruce W., Borodovsky, Mark, Burns, Claire, Canbäck, Björn, Casselton, Lorna A., Cheng, C.K., Deng, Jixin, Dietrich, Fred S., Fargo, David C., Farman, Mark L., Gathman, Allen C., Goldberg, Jonathan, Guigó, Roderic, Hoegger, Patrick J., Hooker, James B., Huggins, Ashleigh, James, Timothy Y., Kamada, Takashi, Kilaru, Sreedhar, Kodira, Chinnapa, Kües, Ursula, Kupfer, Doris, Kwan, H.S., Lomsadze, Alexandre, Li, Weixi, Lilly, Walt W., Ma, Li-Jun, Mackey, Aaron J., Manning, Gerard, Martin, Francis, Muraguchi, Hajime, Natvig, Donald O., Palmerini, Heather, Ramesh, Marilee A., Rehmeyer, Cathy J., Roe, Bruce A., Shenoy, Narmada, Stanke, Mario, Ter-Hovhannisyan, Vardges, Tunlid, Anders, Velagapudi, Rajesh, Vision, Todd J., Zeng, Qiandong, Zolan, Miriam E., Pukkila, Patricia J.
Publicado em 2010