myPresto/omegagene: a GPU-accelerated molecular dynamics simulator tailored for enhanced conformational sampling methods with a non-Ewald electrostatic scheme

Por Kasahara, Kota, Ma, Benson, Goto, Kota, Dasgupta, Bhaskar, Higo, Junichi, Fukuda, Ikuo, Mashimo, Tadaaki, Akiyama, Yutaka, Nakamura, Haruki
Publicado no Biophys Physicobiol (2016)

myPresto/omegagene 2020: a molecular dynamics simulation engine for virtual-system coupled sampling

Por Kasahara, Kota, Terazawa, Hiroki, Itaya, Hayato, Goto, Satoshi, Nakamura, Haruki, Takahashi, Takuya, Higo, Junichi
Publicado no Biophys Physicobiol (2020)

NeProc predicts binding segments in intrinsically disordered regions without learning binding region sequences

Por Anbo, Hiroto, Amagai, Hiroki, Fukuchi, Satoshi
Publicado no Biophys Physicobiol (2020)

LigandBox: A database for 3D structures of chemical compounds

Por Kawabata, Takeshi, Sugihara, Yusuke, Fukunishi, Yoshifumi, Nakamura, Haruki
Publicado no Biophysics (Nagoya-shi) (2013)

GIRAF: a method for fast search and flexible alignment of ligand binding interfaces in proteins at atomic resolution

Por Kinjo, Akira R., Nakamura, Haruki
Publicado no Biophysics (Nagoya-shi) (2012)