The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

BACKGROUND: Shotgun metagenomics is increasingly used to characterise microbial communities, particularly for the investigation of antimicrobial resistance (AMR) in different animal and environmental contexts. There are many different approaches for inferring the taxonomic composition and AMR gene c...

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Detalhes bibliográficos
Publicado no:Environ Microbiome
Main Authors: Gweon, H. Soon, Shaw, Liam P., Swann, Jeremy, De Maio, Nicola, AbuOun, Manal, Niehus, Rene, Hubbard, Alasdair T. M., Bowes, Mike J., Bailey, Mark J., Peto, Tim E. A., Hoosdally, Sarah J., Walker, A. Sarah, Sebra, Robert P., Crook, Derrick W., Anjum, Muna F., Read, Daniel S., Stoesser, Nicole
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2019
Assuntos:
Research Article
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC8204541/
https://ncbi.nlm.nih.gov/pubmed/33902704
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s40793-019-0347-1
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