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Analysis of a small outbreak of Shiga toxin-producing Escherichia coli O157:H7 using long-read sequencing

Compared to short-read sequencing data, long-read sequencing facilitates single contiguous de novo assemblies and characterization of the prophage region of the genome. Here, we describe our methodological approach to using Oxford Nanopore Technology (ONT) sequencing data to quantify genetic related...

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Bibliografiska uppgifter
I publikationen:Microb Genom
Huvudupphovsmän: Greig, David R., Jenkins, Claire, Gharbia, Saheer E., Dallman, Timothy J.
Materialtyp: Artigo
Språk:Inglês
Publicerad: Microbiology Society 2021
Ämnen:
Länkar:https://ncbi.nlm.nih.gov/pmc/articles/PMC8190617/
https://ncbi.nlm.nih.gov/pubmed/33683192
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1099/mgen.0.000545
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