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Collecting and managing taxonomic data with NCBI-taxonomist

SUMMARY: We present NCBI-taxonomist—a command-line tool written in Python that collects and manages taxonomic data from the National Center for Biotechnology Information (NCBI). NCBI-taxonomist does not depend on a pre-downloaded taxonomic database but can store data locally. NCBI-taxonomist has six...

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Détails bibliographiques
Publié dans:Bioinformatics
Auteurs principaux: Buchmann, Jan P, Holmes, Edward C
Format: Artigo
Langue:Inglês
Publié: Oxford University Press 2020
Sujets:
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC8016462/
https://ncbi.nlm.nih.gov/pubmed/33326008
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btaa1027
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