qSNE: quadratic rate t-SNE optimizer with automatic parameter tuning for large datasets

MOTIVATION: Non-parametric dimensionality reduction techniques, such as t-distributed stochastic neighbor embedding (t-SNE), are the most frequently used methods in the exploratory analysis of single-cell datasets. Current implementations scale poorly to massive datasets and often require downsampli...

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Detalhes bibliográficos
Publicado no:Bioinformatics
Main Authors: Häkkinen, Antti, Koiranen, Juha, Casado, Julia, Kaipio, Katja, Lehtonen, Oskari, Petrucci, Eleonora, Hynninen, Johanna, Hietanen, Sakari, Carpén, Olli, Pasquini, Luca, Biffoni, Mauro, Lehtonen, Rainer, Hautaniemi, Sampsa
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2020
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Original Papers
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC7755412/
https://ncbi.nlm.nih.gov/pubmed/32663244
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btaa637
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