BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons

BACKGROUND: The ability to compare samples or studies easily using metabarcoding so as to better interpret microbial ecology results is an upcoming challenge. A growing number of metabarcoding pipelines are available, each with its own benefits and limitations. However, very few have been developed...

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Pubblicato in:BMC Bioinformatics
Autori principali: Djemiel, Christophe, Dequiedt, Samuel, Karimi, Battle, Cottin, Aurélien, Girier, Thibault, El Djoudi, Yassin, Wincker, Patrick, Lelièvre, Mélanie, Mondy, Samuel, Chemidlin Prévost-Bouré, Nicolas, Maron, Pierre-Alain, Ranjard, Lionel, Terrat, Sébastien
Natura: Artigo
Lingua:Inglês
Pubblicazione: BioMed Central 2020
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Research Article
Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC7603665/
https://ncbi.nlm.nih.gov/pubmed/33129268
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-020-03829-3
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