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phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes

The small-subunit rRNA (SSU rRNA) gene is the key marker in molecular ecology for all domains of life, but it is largely absent from metagenome-assembled genomes that often are the only resource available for environmental microbes. Here, we present phyloFlash, a pipeline to overcome this gap with r...

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Detalhes bibliográficos
Publicado no:mSystems
Main Authors: Gruber-Vodicka, Harald R., Seah, Brandon K. B., Pruesse, Elmar
Formato: Artigo
Idioma:Inglês
Publicado em: American Society for Microbiology 2020
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC7593591/
https://ncbi.nlm.nih.gov/pubmed/33109753
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1128/mSystems.00920-20
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