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Ultrafast Sample Placement on Existing Trees (UShER) Empowers Real-Time Phylogenetics for the SARS-CoV-2 Pandemic

As the SARS-CoV-2 virus spreads through human populations, the unprecedented accumulation of viral genome sequences is ushering a new era of “genomic contact tracing” – that is, using viral genome sequences to trace local transmission dynamics. However, because the viral phylogeny is already so larg...

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Библиографические подробности
Опубликовано в: :bioRxiv
Главные авторы: Turakhia, Yatish, Thornlow, Bryan, Hinrichs, Angie S., De Maio, Nicola, Gozashti, Landen, Lanfear, Robert, Haussler, David, Corbett-Detig, Russell
Формат: Artigo
Язык:Inglês
Опубликовано: Cold Spring Harbor Laboratory 2020
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Online-ссылка:https://ncbi.nlm.nih.gov/pmc/articles/PMC7536873/
https://ncbi.nlm.nih.gov/pubmed/33024970
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/2020.09.26.314971
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