Gradients Do Grow on Trees: A Linear-Time O(N)-Dimensional Gradient for Statistical Phylogenetics

Calculation of the log-likelihood stands as the computational bottleneck for many statistical phylogenetic algorithms. Even worse is its gradient evaluation, often used to target regions of high probability. Order [Formula: see text]-dimensional gradient calculations based on the standard pruning al...

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Bibliographic Details
Published in:Mol Biol Evol
Main Authors: Ji, Xiang, Zhang, Zhenyu, Holbrook, Andrew, Nishimura, Akihiko, Baele, Guy, Rambaut, Andrew, Lemey, Philippe, Suchard, Marc A
Format: Artigo
Language:Inglês
Published: Oxford University Press 2020
Subjects:
Methods
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC7530611/
https://ncbi.nlm.nih.gov/pubmed/32458974
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/molbev/msaa130
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