Using affinity propagation clustering for identifying bacterial clades and subclades with whole-genome sequences of Francisella tularensis

By combining a reference-independent SNP analysis and average nucleotide identity (ANI) with affinity propagation clustering (APC), we developed a significantly improved methodology allowing resolving phylogenetic relationships, based on objective criteria. These bioinformatics tools can be used as...

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Bibliografiska uppgifter
I publikationen:PLoS Negl Trop Dis
Huvudupphovsmän: Busch, Anne, Homeier-Bachmann, Timo, Abdel-Glil, Mostafa Y., Hackbart, Anja, Hotzel, Helmut, Tomaso, Herbert
Materialtyp: Artigo
Språk:Inglês
Publicerad: Public Library of Science 2020
Ämnen:
Research Article
Länkar:https://ncbi.nlm.nih.gov/pmc/articles/PMC7523947/
https://ncbi.nlm.nih.gov/pubmed/32991594
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pntd.0008018
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