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CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities

BACKGROUND: Illumina paired-end reads are often used for 16S analysis in metagenomic studies. Since DNA fragment size is usually smaller than the sum of lengths of paired reads, reads can be merged for downstream analysis. In spite of development of several tools for merging of paired-end reads, poo...

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Vydáno v:BMC Bioinformatics
Hlavní autoři: Kondratenko, Yulia, Korobeynikov, Anton, Lapidus, Alla
Médium: Artigo
Jazyk:Inglês
Vydáno: BioMed Central 2020
Témata:
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC7379820/
https://ncbi.nlm.nih.gov/pubmed/32703166
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-020-03591-6
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