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SHOGUN: a modular, accurate and scalable framework for microbiome quantification

SUMMARY: The software pipeline SHOGUN profiles known taxonomic and gene abundances of short-read shotgun metagenomics sequencing data. The pipeline is scalable, modular and flexible. Data analysis and transformation steps can be run individually or together in an automated workflow. Users can easily...

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Dettagli Bibliografici
Pubblicato in:Bioinformatics
Autori principali: Hillmann, Benjamin, Al-Ghalith, Gabriel A, Shields-Cutler, Robin R, Zhu, Qiyun, Knight, Rob, Knights, Dan
Natura: Artigo
Lingua:Inglês
Pubblicazione: Oxford University Press 2020
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Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC7359755/
https://ncbi.nlm.nih.gov/pubmed/32365167
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btaa277
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