LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities

MOTIVATION: RNA secondary structure prediction is widely used to understand RNA function. Recently, there has been a shift away from the classical minimum free energy methods to partition function-based methods that account for folding ensembles and can therefore estimate structure and base pair pro...

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Shranjeno v:
Bibliografske podrobnosti
izdano v:Bioinformatics
Main Authors: Zhang, He, Zhang, Liang, Mathews, David H, Huang, Liang
Format: Artigo
Jezik:Inglês
Izdano: Oxford University Press 2020
Teme:
Macromolecular Sequence, Structure, and Function
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC7355276/
https://ncbi.nlm.nih.gov/pubmed/32657379
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btaa460
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