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The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances
We study the number N(k) of length-k word matches between pairs of evolutionarily related DNA sequences, as a function of k. We show that the Jukes-Cantor distance between two genome sequences—i.e. the number of substitutions per site that occurred since they evolved from their last common ancestor—...
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| Wydane w: | PLoS One |
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| Główni autorzy: | , , , , , |
| Format: | Artigo |
| Język: | Inglês |
| Wydane: |
Public Library of Science
2020
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| Hasła przedmiotowe: | |
| Dostęp online: | https://ncbi.nlm.nih.gov/pmc/articles/PMC7010260/ https://ncbi.nlm.nih.gov/pubmed/32040534 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0228070 |
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