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GPU-Accelerated Implementation of Continuous Constant pH Molecular Dynamics in Amber: pK(a) Predictions with Single-pH Simulations

We present a GPU implementation of the continuous constant pH molecular dynamics (CpHMD) based on the most recent generalized Born implicit-solvent model in the pmemd engine of the Amber molecular dynamics package. To test the accuracy of the tool for rapid pK(a) predictions, a series of 2-ns single...

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Bibliografiske detaljer
Udgivet i:J Chem Inf Model
Main Authors: Harris, Robert C., Shen, Jana
Format: Artigo
Sprog:Inglês
Udgivet: 2019
Fag:
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC6934042/
https://ncbi.nlm.nih.gov/pubmed/31661616
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/acs.jcim.9b00754
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