Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage

BACKGROUND: In many fields of biomedical research, it is important to estimate phylogenetic distances between taxa based on low-coverage sequencing reads. Major applications are, for example, phylogeny reconstruction, species identification from small sequencing samples, or bacterial strain typing i...

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Shranjeno v:
Bibliografske podrobnosti
izdano v:BMC Bioinformatics
Main Authors: Lau, Anna-Katharina, Dörrer, Svenja, Leimeister, Chris-André, Bleidorn, Christoph, Morgenstern, Burkhard
Format: Artigo
Jezik:Inglês
Izdano: BioMed Central 2019
Teme:
Research
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC6916211/
https://ncbi.nlm.nih.gov/pubmed/31842735
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-019-3205-7
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