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Empirical design of a variant quality control pipeline for whole genome sequencing data using replicate discordance
The success of next-generation sequencing depends on the accuracy of variant calls. Few objective protocols exist for QC following variant calling from whole genome sequencing (WGS) data. After applying QC filtering based on Genome Analysis Tool Kit (GATK) best practices, we used genotype discordanc...
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| Publicat a: | Sci Rep |
|---|---|
| Autors principals: | , , , , , , , |
| Format: | Artigo |
| Idioma: | Inglês |
| Publicat: |
Nature Publishing Group UK
2019
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| Matèries: | |
| Accés en línia: | https://ncbi.nlm.nih.gov/pmc/articles/PMC6834861/ https://ncbi.nlm.nih.gov/pubmed/31695094 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1038/s41598-019-52614-7 |
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