RaGOO: fast and accurate reference-guided scaffolding of draft genomes

We present RaGOO, a reference-guided contig ordering and orienting tool that leverages the speed and sensitivity of Minimap2 to accurately achieve chromosome-scale assemblies in minutes. After the pseudomolecules are constructed, RaGOO identifies structural variants, including those spanning sequenc...

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Bibliografiska uppgifter
I publikationen:Genome Biol
Huvudupphovsmän: Alonge, Michael, Soyk, Sebastian, Ramakrishnan, Srividya, Wang, Xingang, Goodwin, Sara, Sedlazeck, Fritz J., Lippman, Zachary B., Schatz, Michael C.
Materialtyp: Artigo
Språk:Inglês
Publicerad: BioMed Central 2019
Ämnen:
Method
Länkar:https://ncbi.nlm.nih.gov/pmc/articles/PMC6816165/
https://ncbi.nlm.nih.gov/pubmed/31661016
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13059-019-1829-6
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