Holistic optimization of an RNA-seq workflow for multi-threaded environments

SUMMARY: For many next generation-sequencing pipelines, the most computationally intensive step is the alignment of reads to a reference sequence. As a result, alignment software such as the Burrows-Wheeler Aligner is optimized for speed and is often executed in parallel on the cloud. However, there...

Full description

Saved in:
Bibliographic Details
Published in:Bioinformatics
Main Authors: Hung, Ling-Hong, Lloyd, Wes, Agumbe Sridhar, Radhika, Athmalingam Ravishankar, Saranya Devi, Xiong, Yuguang, Sobie, Eric, Yeung, Ka Yee
Format: Artigo
Language:Inglês
Published: Oxford University Press 2019
Subjects:
Applications Notes
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC6792127/
https://ncbi.nlm.nih.gov/pubmed/30859176
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btz169
Tags: Add Tag
No Tags, Be the first to tag this record!

Similar Items