metagenomeFeatures: an R package for working with 16S rRNA reference databases and marker-gene survey feature data

SUMMARY: We developed the metagenomeFeatures R Bioconductor package along with annotation packages for three 16S rRNA databases (Greengenes, RDP and SILVA) to facilitate working with 16S rRNA databases and marker-gene survey feature data. The metagenomeFeatures package defines two classes, MgDb for...

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Publicado en:Bioinformatics
Main Authors: Olson, Nathan D, Shah, Nidhi, Kancherla, Jayaram, Wagner, Justin, Paulson, Joseph N, Corrada Bravo, Hector
Formato: Artigo
Idioma:Inglês
Publicado: Oxford University Press 2019
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Acceso en liña:https://ncbi.nlm.nih.gov/pmc/articles/PMC6761971/
https://ncbi.nlm.nih.gov/pubmed/30821316
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btz136
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