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Generalized Born Based Continuous Constant pH Molecular Dynamics in Amber: Implementation, Benchmarking, and Analysis

Solution pH plays an important role in structure and dynamics of biomolecular systems; however, pH effects cannot be accurately accounted for in conventional molecular dynamics simulations based on fixed protonation states. Continuous constant pH molecular dynamics (CpHMD) based on the λ-dynamics fr...

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Bibliographic Details
Published in:J Chem Inf Model
Main Authors: Huang, Yandong, Harris, Robert C., Shen, Jana
Format: Artigo
Language:Inglês
Published: 2018
Subjects:
Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC6516748/
https://ncbi.nlm.nih.gov/pubmed/29949356
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/acs.jcim.8b00227
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