NanoDJ: a Dockerized Jupyter notebook for interactive Oxford Nanopore MinION sequence manipulation and genome assembly

BACKGROUND: The Oxford Nanopore Technologies (ONT) MinION portable sequencer makes it possible to use cutting-edge genomic technologies in the field and the academic classroom. RESULTS: We present NanoDJ, a Jupyter notebook integration of tools for simplified manipulation and assembly of DNA sequenc...

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Detalhes bibliográficos
Publicado no:BMC Bioinformatics
Main Authors: Rodríguez-Pérez, Héctor, Hernández-Beeftink, Tamara, Lorenzo-Salazar, José M., Roda-García, José L., Pérez-González, Carlos J., Colebrook, Marcos, Flores, Carlos
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2019
Assuntos:
Software
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6509807/
https://ncbi.nlm.nih.gov/pubmed/31072312
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-019-2860-z
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