MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data

MOTIVATION: Analysis toolkits for shotgun metagenomic data achieve strain-level characterization of complex microbial communities by capturing intra-species gene content variation. Yet, these tools are hampered by the extent of reference genomes that are far from covering all microbial variability,...

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Bibliografiske detaljer
Udgivet i:Bioinformatics
Main Authors: Plaza Oñate, Florian, Le Chatelier, Emmanuelle, Almeida, Mathieu, Cervino, Alessandra C L, Gauthier, Franck, Magoulès, Frédéric, Ehrlich, S Dusko, Pichaud, Matthieu
Format: Artigo
Sprog:Inglês
Udgivet: Oxford University Press 2019
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Original Papers
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC6499236/
https://ncbi.nlm.nih.gov/pubmed/30252023
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/bty830
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