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Comparison of the umbrella sampling and the double decoupling method in binding free energy predictions for SAMPL6 octa-acid host-guest challenges

We calculate the absolute binding free energies of tetra-methylated octa-acids host-guest systems as a part of the SAMPL6 blind challenge (receipt ID vq30p). We employed two different free energy simulation methods, i.e., the umbrella sampling (US) and double decoupling method (DDM). The US method w...

Deskribapen osoa

Gorde:
Xehetasun bibliografikoak
Argitaratua izan da:J Comput Aided Mol Des
Egile Nagusiak: Nishikawa, Naohiro, Han, Kyungreem, Wu, Xiongwu, Tofoleanu, Florentina, Brooks, Bernard R.
Formatua: Artigo
Hizkuntza:Inglês
Argitaratua: 2018
Gaiak:
Sarrera elektronikoa:https://ncbi.nlm.nih.gov/pmc/articles/PMC6413509/
https://ncbi.nlm.nih.gov/pubmed/30324304
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1007/s10822-018-0166-2
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