RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor

RAVEN is a commonly used MATLAB toolbox for genome-scale metabolic model (GEM) reconstruction, curation and constraint-based modelling and simulation. Here we present RAVEN Toolbox 2.0 with major enhancements, including: (i) de novo reconstruction of GEMs based on the MetaCyc pathway database; (ii)...

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Publicat a:PLoS Comput Biol
Autors principals: Wang, Hao, Marcišauskas, Simonas, Sánchez, Benjamín J., Domenzain, Iván, Hermansson, Daniel, Agren, Rasmus, Nielsen, Jens, Kerkhoven, Eduard J.
Format: Artigo
Idioma:Inglês
Publicat: Public Library of Science 2018
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Research Article
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC6207324/
https://ncbi.nlm.nih.gov/pubmed/30335785
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pcbi.1006541
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