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TraRECo: a greedy approach based de novo transcriptome assembler with read error correction using consensus matrix

BACKGROUND: The challenges when developing a good de novo transcriptome assembler include how to deal with read errors and sequence repeats. Almost all de novo assemblers utilize a de Bruijn graph, with which complexity grows linearly with data size while suffering from errors and repeats. Although...

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Publié dans:BMC Genomics
Auteurs principaux: Yoon, Seokhyun, Kim, Daeseung, Kang, Keunsoo, Park, Woong June
Format: Artigo
Langue:Inglês
Publié: BioMed Central 2018
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Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC6123912/
https://ncbi.nlm.nih.gov/pubmed/30180798
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12864-018-5034-x
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