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Re-annotation of 12,495 prokaryotic 16S rRNA 3’ ends and analysis of Shine-Dalgarno and anti-Shine-Dalgarno sequences

We examined 20,648 prokaryotic unique taxids with respect to the annotation of the 3’ end of the 16S rRNA, which contains the anti-Shine-Dalgarno sequence. We used the sequence of highly conserved helix 45 of the 16S rRNA as a guide. By this criterion, 8,153 annotated 3’ ends correctly included the...

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Bibliografiska uppgifter
I publikationen:PLoS One
Huvudupphovsmän: Amin, Mohammad Ruhul, Yurovsky, Alisa, Chen, Yuping, Skiena, Steve, Futcher, Bruce
Materialtyp: Artigo
Språk:Inglês
Publicerad: Public Library of Science 2018
Ämnen:
Länkar:https://ncbi.nlm.nih.gov/pmc/articles/PMC6107228/
https://ncbi.nlm.nih.gov/pubmed/30138483
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0202767
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