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Applying Pose Clustering and MD Simulations To Eliminate False Positives in Molecular Docking

In this work, we developed a computational protocol that employs multiple molecular docking experiments, followed by pose clustering, molecular dynamic simulations (10 ns), and energy rescoring to produce reliable 3D models of antibody–carbohydrate complexes. The protocol was applied to 10 antibody–...

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Detalhes bibliográficos
Publicado no:J Chem Inf Model
Main Authors: Makeneni, Spandana, Thieker, David F., Woods, Robert J.
Formato: Artigo
Idioma:Inglês
Publicado em: 2018
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6067002/
https://ncbi.nlm.nih.gov/pubmed/29431438
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/acs.jcim.7b00588
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