Faucet: streaming de novo assembly graph construction

MOTIVATION: We present Faucet, a two-pass streaming algorithm for assembly graph construction. Faucet builds an assembly graph incrementally as each read is processed. Thus, reads need not be stored locally, as they can be processed while downloading data and then discarded. We demonstrate this func...

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Detaylı Bibliyografya
Yayımlandı:Bioinformatics
Asıl Yazarlar: Rozov, Roye, Goldshlager, Gil, Halperin, Eran, Shamir, Ron
Materyal Türü: Artigo
Dil:Inglês
Baskı/Yayın Bilgisi: Oxford University Press 2018
Konular:
Special Issue: Recomb-Seq/Recomb-Ccb/Recomb-Cg
Online Erişim:https://ncbi.nlm.nih.gov/pmc/articles/PMC5870852/
https://ncbi.nlm.nih.gov/pubmed/29036597
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btx471
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