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SeqLib: a C ++ API for rapid BAM manipulation, sequence alignment and sequence assembly

We present SeqLib, a C ++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment...

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Detalles Bibliográficos
Publicado en:Bioinformatics
Main Authors: Wala, Jeremiah, Beroukhim, Rameen
Formato: Artigo
Idioma:Inglês
Publicado: Oxford University Press 2017
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Acceso en liña:https://ncbi.nlm.nih.gov/pmc/articles/PMC5859992/
https://ncbi.nlm.nih.gov/pubmed/28011768
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btw741
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