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Extension of the viral ecology in humans using viral profile hidden Markov models

When human samples are sequenced, many assembled contigs are “unknown”, as conventional alignments find no similarity to known sequences. Hidden Markov models (HMM) exploit the positions of specific nucleotides in protein-encoding codons in various microbes. The algorithm HMMER3 implements HMM using...

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Détails bibliographiques
Publié dans:PLoS One
Auteurs principaux: Bzhalava, Zurab, Hultin, Emilie, Dillner, Joakim
Format: Artigo
Langue:Inglês
Publié: Public Library of Science 2018
Sujets:
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC5774701/
https://ncbi.nlm.nih.gov/pubmed/29351302
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0190938
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