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recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor

The recount2 resource is composed of over 70,000 uniformly processed human RNA-seq samples spanning TCGA and SRA, including GTEx. The processed data can be accessed via the recount2 website and the recountBioconductor package. This workflow explains in detail how to use the recountpackage and how to...

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Détails bibliographiques
Publié dans:F1000Res
Auteurs principaux: Collado-Torres, Leonardo, Nellore, Abhinav, Jaffe, Andrew E.
Format: Artigo
Langue:Inglês
Publié: F1000Research 2017
Sujets:
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC5621122/
https://ncbi.nlm.nih.gov/pubmed/29043067
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.12688/f1000research.12223.1
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