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SEEKR: Simulation Enabled Estimation of Kinetic Rates, A Computational Tool to Estimate Molecular Kinetics and its Application to Trypsin-Benzamidine Binding

We present the Simulation Enabled Estimation of Kinetic Rates (SEEKR) package, a suite of open-source scripts and tools designed to enable researchers to perform multi-scale computation of the kinetics of molecular binding, unbinding, and transport using a combination of molecular dynamics, Brownian...

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Detalhes bibliográficos
Publicado no:J Phys Chem B
Main Authors: Votapka, Lane W., Jagger, Benjamin R., Heyneman, Alexandra L., Amaro, Rommie E.
Formato: Artigo
Idioma:Inglês
Publicado em: 2017
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC5562489/
https://ncbi.nlm.nih.gov/pubmed/28191969
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/acs.jpcb.6b09388
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