QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing

BACKGROUND: Genome-wide miRNA expression data can be used to study miRNA dysregulation comprehensively. Although many open-source tools for microRNA (miRNA)-seq data analyses are available, challenges remain in accurate miRNA quantification from large-scale miRNA-seq dataset. We implemented a pipeli...

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Publicat a:BMC Bioinformatics
Autors principals: Zhao, Shanrong, Gordon, William, Du, Sarah, Zhang, Chi, He, Wen, Xi, Li, Mathur, Sachin, Agostino, Michael, Paradis, Theresa, von Schack, David, Vincent, Michael, Zhang, Baohong
Format: Artigo
Idioma:Inglês
Publicat: BioMed Central 2017
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Software
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC5359966/
https://ncbi.nlm.nih.gov/pubmed/28320324
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-017-1601-4
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