Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

The adoption of whole-genome sequencing within the public health realm for molecular characterization of bacterial pathogens has been followed by an increased emphasis on real-time detection of emerging outbreaks (e.g., food-borne Salmonellosis). In turn, large databases of whole-genome sequence dat...

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Publicat a:PLoS One
Autors principals: Pettengill, James B., Pightling, Arthur W., Baugher, Joseph D., Rand, Hugh, Strain, Errol
Format: Artigo
Idioma:Inglês
Publicat: Public Library of Science 2016
Matèries:
Research Article
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC5104361/
https://ncbi.nlm.nih.gov/pubmed/27832109
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0166162
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