The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data

In this study we developed a genome-based method for detecting Staphylococcus aureus subtypes from metagenome shotgun sequence data. We used a binomial mixture model and the coverage counts at >100,000 known S. aureus SNP (single nucleotide polymorphism) sites derived from prior comparative genom...

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Bibliografiske detaljer
Udgivet i:PeerJ
Main Authors: Joseph, Sandeep J., Li, Ben, Petit III, Robert A., Qin, Zhaohui S., Darrow, Lyndsey, Read, Timothy D.
Format: Artigo
Sprog:Inglês
Udgivet: PeerJ Inc. 2016
Fag:
Bioinformatics
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC5075713/
https://ncbi.nlm.nih.gov/pubmed/27781166
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.7717/peerj.2571
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