Phylogenetic tree construction using trinucleotide usage profile (TUP)

BACKGROUND: It has been a challenging task to build a genome-wide phylogenetic tree for a large group of species containing a large number of genes with long nucleotides sequences. The most popular method, called feature frequency profile (FFP-k), finds the frequency distribution for all words of ce...

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Detalhes bibliográficos
Publicado no:BMC Bioinformatics
Main Authors: Chen, Si, Deng, Lih-Yuan, Bowman, Dale, Shiau, Jyh-Jen Horng, Wong, Tit-Yee, Madahian, Behrouz, Lu, Henry Horng-Shing
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2016
Assuntos:
Proceedings
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC5073869/
https://ncbi.nlm.nih.gov/pubmed/27766939
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-016-1222-3
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