SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences

Summary: Simple Sequence Repeats (SSRs) are used to address a variety of research questions in a variety of fields (e.g. population genetics, phylogenetics, forensics, etc.), due to their high mutability within and between species. Here, we present an innovative algorithm, SA-SSR, based on suffix an...

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Pubblicato in:Bioinformatics
Autori principali: Pickett, B. D., Karlinsey, S. M., Penrod, C. E., Cormier, M. J., Ebbert, M. T. W., Shiozawa, D. K., Whipple, C. J., Ridge, P. G.
Natura: Artigo
Lingua:Inglês
Pubblicazione: Oxford University Press 2016
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Applications Notes
Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC5013907/
https://ncbi.nlm.nih.gov/pubmed/27170037
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btw298
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