HybPiper: Extracting coding sequence and introns for phylogenetics from high-throughput sequencing reads using target enrichment(1)

PREMISE OF THE STUDY: Using sequence data generated via target enrichment for phylogenetics requires reassembly of high-throughput sequence reads into loci, presenting a number of bioinformatics challenges. We developed HybPiper as a user-friendly platform for assembly of gene regions, extraction of...

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Detalhes bibliográficos
Publicado no:Appl Plant Sci
Main Authors: Johnson, Matthew G., Gardner, Elliot M., Liu, Yang, Medina, Rafael, Goffinet, Bernard, Shaw, A. Jonathan, Zerega, Nyree J. C., Wickett, Norman J.
Formato: Artigo
Idioma:Inglês
Publicado em: Botanical Society of America 2016
Assuntos:
Software Note
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC4948903/
https://ncbi.nlm.nih.gov/pubmed/27437175
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3732/apps.1600016
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