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VariantBam: filtering and profiling of next-generational sequencing data using region-specific rules

We developed VariantBam, a C ++ read filtering and profiling tool for use with BAM, CRAM and SAM sequencing files. VariantBam provides a flexible framework for extracting sequencing reads or read-pairs that satisfy combinations of rules, defined by any number of genomic intervals or variant sites. W...

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Bibliografski detalji
Izdano u:Bioinformatics
Glavni autori: Wala, Jeremiah, Zhang, Cheng-Zhong, Meyerson, Matthew, Beroukhim, Rameen
Format: Artigo
Jezik:Inglês
Izdano: Oxford University Press 2016
Teme:
Online pristup:https://ncbi.nlm.nih.gov/pmc/articles/PMC4920121/
https://ncbi.nlm.nih.gov/pubmed/27153727
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btw111
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