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Study on the Application of the Combination of TMD Simulation and Umbrella Sampling in PMF Calculation for Molecular Conformational Transitions

Free energy calculations of the potential of mean force (PMF) based on the combination of targeted molecular dynamics (TMD) simulations and umbrella samplings as a function of physical coordinates have been applied to explore the detailed pathways and the corresponding free energy profiles for the c...

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Detalhes bibliográficos
Publicado no:Int J Mol Sci
Main Authors: Wang, Qing, Xue, Tuo, Song, Chunnian, Wang, Yan, Chen, Guangju
Formato: Artigo
Idioma:Inglês
Publicado em: MDPI 2016
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC4881518/
https://ncbi.nlm.nih.gov/pubmed/27171075
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3390/ijms17050692
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