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Markov State Models and tICA Reveal a Nonnative Folding Nucleus in Simulations of NuG2

After reanalyzing simulations of NuG2—a designed mutant of protein G—generated by Lindorff-Larsen et al. with time structure-based independent components analysis and Markov state models as well as performing 1.5 ms of additional sampling on Folding@home, we found an intermediate with a register-shi...

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Vydáno v:Biophys J
Hlavní autoři: Schwantes, Christian R., Shukla, Diwakar, Pande, Vijay S.
Médium: Artigo
Jazyk:Inglês
Vydáno: The Biophysical Society 2016
Témata:
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC4850345/
https://ncbi.nlm.nih.gov/pubmed/27119632
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1016/j.bpj.2016.03.026
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