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CUDAMPF: a multi-tiered parallel framework for accelerating protein sequence search in HMMER on CUDA-enabled GPU

BACKGROUND: HMMER software suite is widely used for analysis of homologous protein and nucleotide sequences with high sensitivity. The latest version of hmmsearch in HMMER 3.x, utilizes heuristic-pipeline which consists of MSV/SSV (Multiple/Single ungapped Segment Viterbi) stage, P7Viterbi stage and...

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Detalhes bibliográficos
Publicado no:BMC Bioinformatics
Main Authors: Jiang, Hanyu, Ganesan, Narayan
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2016
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC4769571/
https://ncbi.nlm.nih.gov/pubmed/26920848
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-016-0946-4
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