A Computational Solution to Automatically Map Metabolite Libraries in the Context of Genome Scale Metabolic Networks

This article describes a generic programmatic method for mapping chemical compound libraries on organism-specific metabolic networks from various databases (KEGG, BioCyc) and flat file formats (SBML and Matlab files). We show how this pipeline was successfully applied to decipher the coverage of che...

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Bibliografske podrobnosti
izdano v:Front Mol Biosci
Main Authors: Merlet, Benjamin, Paulhe, Nils, Vinson, Florence, Frainay, Clément, Chazalviel, Maxime, Poupin, Nathalie, Gloaguen, Yoann, Giacomoni, Franck, Jourdan, Fabien
Format: Artigo
Jezik:Inglês
Izdano: Frontiers Media S.A. 2016
Teme:
Molecular Biosciences
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC4754433/
https://ncbi.nlm.nih.gov/pubmed/26909353
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3389/fmolb.2016.00002
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