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HISAT: a fast spliced aligner with low memory requirements

HISAT (hierarchical indexing for spliced alignment of transcripts) is a highly efficient system for aligning reads from RNA sequencing experiments. HISAT uses an indexing scheme based on the Burrows-Wheeler transform and the Ferragina-Manzini (FM) index, employing two types of indexes for alignment:...

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Detalles Bibliográficos
Publicado en:Nat Methods
Main Authors: Kim, Daehwan, Langmead, Ben, Salzberg, Steven L
Formato: Artigo
Idioma:Inglês
Publicado: 2015
Assuntos:
Acceso en liña:https://ncbi.nlm.nih.gov/pmc/articles/PMC4655817/
https://ncbi.nlm.nih.gov/pubmed/25751142
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1038/nmeth.3317
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