Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis

Genome-wide functional analyses require high-resolution genome assembly and annotation. We applied ChIA-PET to analyze gene regulatory networks, including 3D chromosome interactions, underlying thyroid hormone (TH) signaling in the frog Xenopus tropicalis. As the available versions of Xenopus tropic...

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Vydáno v:PLoS One
Hlavní autoři: Buisine, Nicolas, Ruan, Xiaoan, Bilesimo, Patrice, Grimaldi, Alexis, Alfama, Gladys, Ariyaratne, Pramila, Mulawadi, Fabianus, Chen, Jieqi, Sung, Wing-Kin, Liu, Edison T., Demeneix, Barbara A., Ruan, Yijun, Sachs, Laurent M.
Médium: Artigo
Jazyk:Inglês
Vydáno: Public Library of Science 2015
Témata:
Research Article
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC4562602/
https://ncbi.nlm.nih.gov/pubmed/26348928
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0137526
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