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The jigsaw puzzle of sequence phenotype inference: Piecing together Shannon entropy, importance sampling, and Empirical Bayes

A nucleotide sequence 35 base pairs long can take 1,180,591,620,717,411,303,424 possible values. An example of systems biology datasets, protein binding microarrays, contain activity data from about 40000 such sequences. The discrepancy between the number of possible configurations and the available...

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Bibliografiske detaljer
Udgivet i:J Theor Biol
Main Authors: Shreif, Zeina, Striegel, Deborah A., Periwal, Vipul
Format: Artigo
Sprog:Inglês
Udgivet: 2015
Fag:
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC4522360/
https://ncbi.nlm.nih.gov/pubmed/26092377
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1016/j.jtbi.2015.06.010
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