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HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements

Summary: We implemented a high-throughput identification pipeline for promoter interacting enhancer element to streamline the workflow from mapping raw Hi-C reads, identifying DNA–DNA interacting fragments with high confidence and quality control, detecting histone modifications and DNase hypersensi...

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Detalhes bibliográficos
Publicado no:Bioinformatics
Main Authors: Hwang, Yih-Chii, Lin, Chiao-Feng, Valladares, Otto, Malamon, John, Kuksa, Pavel P., Zheng, Qi, Gregory, Brian D., Wang, Li-San
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2015
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC4393516/
https://ncbi.nlm.nih.gov/pubmed/25480377
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btu801
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